Institute for Structural and Chemical Biology
Publications
Members of the institute have published in a wide range of peer-reviewed journals, including Nature, Molecular Cell, Angewandte Chemie, JACS, Science Advances, Proceedings of the National Academy of Sciences USA, Nucleic Acids Research, Chemical Science and many others.
2024
Baskaran K, Ploskon E, Tejero R, Yokochi M, Harrus D, Liang Y, Peisach E, Persikova I, Ramelot TA, Sekharan M, Tolchard J, Westbrook JD, Bardiaux B, Schwieters CD, Patwardhan A, Velankar S, Burley SK, Kurisu G, Hoch JC, Montelione GT, Vuister GW, Young JY. Restraint Validation of Biomolecular Structures Determined by NMR in the Protein Data Bank. Structure 32 (3). doi: 10.1101/2024.01.15.575520
Buenaventura T, Bagci H, Patrascan I, Graham JJ, Hipwell KD, Oldenkamp R, King JWD, rtasun J, Young G, Mouzo D, Gomez-Cabrero D,Rowland BD, Panne D, Fisher AG, Merkenschlager M. Competition shapes the landscape of X-chromosome-linked genetic diversity. Nat Genet doi: 10.1038/s41588-024-01840-5
Calver JF, Parmar NR, Harris G, Lithgo RM, Stylianou P, Zetterberg FR, Gooptu B, Mackinnon AC, Carr SB, Borthwick LA, Scott DJ, Stewart ID, Slack RJ, Jenkins RG, John AE. Defining the mechanism of galectin-3-mediated TGF-β1 activation and its role in lung fibrosis. J Biol Chem. doi: 10.1016/j.jbc.2024.107300.
Chothia SY, Emms VL, LA Thomas LA, Bulman NFA, Hopkinson RJ. Formaldehyde quantification using gas chromatography–mass spectrometry reveals high background environmental formaldehyde levels. Sci Rep 14, 20621 doi.org/10.1038/s41598-024-71271-z
Dror I, Chitiashvili T, Tan SYX, Cano CT, Sahakyan A, Markaki Y, Chronis C, Collier AJ, Deng W, Liang G, Sun Y, Afasizheva A, Miller J, Wen Xiao, Douglas L. Black, Ding F, Plath K. XIST directly regulates X-linked and autosomal genes in naive human pluripotent cells. Cell 187, 1, doi:10.1016/j.cell.2023.11.033
Fang J, Gerschel P, Singh K, Apfel UP, Suntharalingam K. Cobalt(III)-Macrocyclic Scaffolds with Anti-Cancer Stem Cell Activity. Molecules. 29(12):2743. doi: 10.3390/molecules29122743.
John T, Saffoon N, Walsby-Tickle J, Hester SS, Dingler FA, Millington CL, McCullagh JSO, Patel KJ, Hopkinson RJ, Schofield CJ Aldehyde-mediated inhibition of asparagine biosynthesis has implications for diabetes and alcoholism Chem Sci. doi:/10.1039/D3SC06551K
Kalra S, Donnelly A, Singh N, Matthews D, Del Villar-Guerra R, Bemmer V, Dominguez C, Allcock N, Cherny D, Revyakin A, Rusling DA Functionalizing DNA Origami by Triplex-Directed Site-Specific Photo-Cross-Linking J. Am. Chem. Soc. DOI https://doi.org/10.1021/jacs.4c03413
Kara, H, Axer A, Muskett FW, Bueno-Alejo CJ, Paschalis V, Taladriz-Sender A, Tubasum S, Vega Marina S, Zhao Z, Clark AW, Hudson AJ, Eperon IC, Burley GA, Dominguez C. 2′-19F labelling of ribose in RNAs: a tool to analyse RNA/protein interactions by NMR in physiological conditions Front. Mol. Biosci. doi.org/10.3389/fmolb.2024.1325041
Kay DF, Özleyen A, Heras CML, Doveston RG, Leney AC. Dissecting the functional behavior of the differentially phosphorylated prolyl isomerase, Pin1. Protein Sci. 33(9):e5138. doi: 10.1002/pro.5138
Lachmann MT, and Duan Z, Rodriguez-Macia P and Birrell JA. The missing pieces in the catalytic cycle of [FeFe] hydrogenases, Chem. Sci. DOI: 10.1039/d4sc04041d
Kwong H-S, Paloni M, Grandvuillemin L, Sirounian S, Ancelin A, Lai-Kee-Him J, Grimaldi M, Carivenc C, Lancey C, Ragan TJ, Hesketh EL, Balaguer P, Barducci A, Gruszczyk J, Bourguet W. Structural Insights into the Activation of Human Aryl Hydrocarbon Receptor by the Environmental Contaminant Benzo[a]pyrene and Structurally Related Compounds, Journal of Molecular Biology. doi:10.1016/j.jmb.2023.168411
Lane D, Allsopp R, Holmes CW, Slingsby OC, Jukes-Jones R, Bird P, Anderson NL, Razavi M, Yip R, Pearson TW, Pope M, Khunti K, Doykov I, Hällqvist J, Mills K, Skipp P, Carling R, Ng L, Shaw J, Gupta P, Jones DJL. A high throughput immuno-affinity mass spectrometry method for detection and quantitation of SARS-CoV-2 nucleoprotein in human saliva and its comparison with RT-PCR, RT-LAMP, and lateral flow rapid antigen test. Clin Chem Lab Med. DOI: 10.1515/cclm-2023-0243
Li Y, Fang J, Singh K, Ortu F, Suntharalingam K. An immunogenic anti-cancer stem cell bi-nuclear copper(II)-flufenamic acid complex Dalton Transactions doi:/10.1039/D4DT00384E
Pitasse-Santos P, Hewitt-Richards I, Abeywickrama Wijewardana Sooriyaarachchi MD, Doveston RG. Harnessing the 14-3-3 protein-protein interaction network. Curr Opin Struct Biol. 28;86: 102822. doi: 10.1016/j.sbi.2024.102822.
Singh K, Singh K, Johnson A, Suntharalingam K, Anti-Breast Cancer Stem Cell Properties of Silver(I)-Non-Steroidal Anti-Inflammatory Drug Complexes Eur. J. Inorg. Chem. e202400133. doi:10.1002/ejic.202400133
Vadakkepat AK, Xue S, Redzej A, Smith TK, Ho BT, Waksman G. Cryo-EM structure of the R388 plasmid conjugative pilus reveals a helical polymer characterized by an unusual pilin/phospholipid binary complex. Structure. S0969-2126(24)00227-2. doi: 10.1016/j.str.2024.06.009.
Vijayanathan M, Vadakkepat AK, Mahendran KR, Sharaf A, Frandsen KEH, Bandyopadhyay D, Pillai MR, Soniya EV. Structural and mechanistic insights into Quinolone Synthase to address its functional promiscuity. Commun Biol. 7(1):566. doi: 10.1038/s42003-024-06152-2.
Ward JA, Romartinez-Alonso B, Kay DF, Bellamy-Carter J, Thurairajah B, Basran J, Kwon H, Leney AC, Macip S, Roversi P, Muskett FW, Doveston RG Characterising the Protein-Protein Interaction Between MDM2 and 14-3-3σ; Proof of Concept for Small Molecule Stabilisation JBC. doi:/10.1016/j.jbc.2024.105651
Wills MFK, Bueno Alejo C, Hundt N, Hudson AJ, Eperon IC. FluoroTensor: identification and tracking of colocalised molecules and their stoichiometries in multi-colour single molecule imaging via deep learning, Computational and Structural Biotechnology Journal, doi.org/10.1016/j.csbj.2024.02.004
Winfrey L, Yun L, Passeri G, Suntharalingam K, Pulis AP. H2 O ⋅ B(C6 F5 )3 -Catalyzed para-Alkylation of Anilines with Alkenes Applied to Late-Stage Functionalization of Non-Steroidal Anti-Inflammatory Drugs. Chemistry. 30(13):e202303130. doi: 10.1002/chem.202303130.
Xiao X, Kennelly JP, Feng A-C, Cheng L, Romartinez-Alonso B, Bedard A , Gao Y, Cui L, G. Young SG, Schwabe JWR, Tontonoz P Aster-B–dependent estradiol synthesis protects female mice from diet-induced obesity J Clin Invest. 134(4):e173002. doi.org/10.1172/JCI173002
2023
Amin H, Zahid S, Hall C, Chaplin AK. Cold snapshots of DNA repair: Cryo-EM structures of DNA-PKcs and NHEJ machinery. Prog Biophys Mol Biol. DOI: 10.1016/j.pbiomolbio.2023.11.007.
Fang J, Orobator O, Olelewe C, Passeri G, Singh K, Awuah S, Suntharalingam K. A Breast Cancer Stem Active Cobalt(III)-Cyclam Complex Containing Flufenamic Acid with Immunogenic Potential Angew. Chem. Int. Ed. DOI: /10.1002/anie.202317940.
Smalley JP, Cowley SM, Hodgkinson JT MDM2 Antagonist Idasanutlin Reduces HDAC1/2 Abundance and Corepressor Partners but Not HDAC3 ACS Med. Chem. Lett. DOI: 10.1021/acsmedchemlett.3c00449
Kefala Stavridi A, Gontier A, Morin V, Frit P, Ropars V, Barboule N, Racca C, Jonchhe S, Morten MJ, Andreani J, Rak A, Legrand P, Bourand-Plantefol A, Hardwick SW, Chirgadze DY, Davey P, De Oliveira TM, Rothenberg E, Britton S, Calsou P, Blundell TL, Varela PF, Chaplin AK, Charbonnier JB. Structural and functional basis of inositol hexaphosphate stimulation of NHEJ through stabilization of Ku-XLF interaction. Nucleic Acids Res. 51(21):11732-11747. DOI: 10.1093/nar/gkad863. PMID: 37870477; PMCID: PMC10682503.
Baker IM, Smalley JP, Sabat KA, Hodgkinson JT, Cowley SM. Comprehensive Transcriptomic Analysis of Novel Class I HDAC Proteolysis Targeting Chimeras (PROTACs). Biochemistry. 62(3):645-656. DOI: 10.1021/acs.biochem.2c00288.
Buehl CJ, Goff NJ, Hardwick SW, Gellert M, Blundell TL, Yang W, Chaplin AK, Meek K. Two distinct long-range synaptic complexes promote different aspects of end processing prior to repair of DNA breaks by non-homologous end joining. Mol Cell. 2765(23)00032-1. DOI: 10.1016/j.molcel.2023.01.012.
Castelli LM, Lin YH, Sanchez-Martinez A, Gül A, Mohd Imran K, Higginbottom A, Upadhyay SK, Márkus NM, Rua Martins R, Cooper-Knock J, Montmasson C, Cohen R, Walton A, Bauer CS, De Vos KJ, Mead RJ, Azzouz M, Dominguez C, Ferraiuolo L, Shaw PJ, Whitworth AJ, Hautbergue GM. A cell-penetrant peptide blocking C9ORF72-repeat RNA nuclear export reduces the neurotoxic effects of dipeptide repeat proteins. Sci Transl Med. 15(685): DOI: 10.1126/scitranslmed.abo3823.
Chongdar N, Rodríguez-Maciá P, Reijerse E, Lubitz W, Ogata H, Birrell JA. Redox tuning of the H-cluster by second coordination sphere amino acids in the sensory [FeFe] hydrogenase from Thermotoga maritima, Chem. Sci., 14, 3682-3692. DOI: 10.1039/d2sc06432d.
Chothia, SY, Carr, M, Monks, PS,Cordell R, Hopkinson RJ. Quantitative detection of formaldehyde using solid phase microextraction gas chromatography–mass spectrometry coupled to cysteamine scavenging. Sci Rep 13, 14642 (2023). DOI: 10.1038/s41598-023-41609-0
Cowan R, Trokter M,Oleksy A, Fedorova M, SawmynadenK, Worzfeld T, Offermanns S, Matthews D, Carr MD, Hall G Nanobody inhibitors of Plexin-B1 identify allostery in plexin-semaphorin interactions and signalling. J Biol Chem. DOI: 10.1016/j.jbc.2023.104740.
Emms VL, Lewis LA, Beja L, Bulman NFA, Pires E, Muskett FW, McCullagh JSO, Swift LP, McHugh PJ, Hopkinson RJ N-Acyloxymethyl-phthalimides deliver genotoxic formaldehyde to human cells Chem Sci. DOI:10.1039/d3sc02867d
Ferrari A, Whang E, Xiao X, Kennelly JP, Romartinez-Alonso B, Mack JJ, Weston T, Chen K, Kim Y, Tol MJ, Bideyan L, Nguyen A, Gao Y, Cui L, Bedard AH, Sandhu J, Lee SD, Fairall L, Williams KJ, Song W, Munguia P, Russell RA, Martin MG, Jung ME, Jiang H, Schwabe JWR, Young SG, Tontonoz P. Aster-dependent nonvesicular transport facilitates dietary cholesterol uptake. Science. 382(6671) DOI: 10.1126/science.adf0966
García-Nieto A, Patel A, Li Y, Oldenkamp R, Feletto L, Graham JJ, Willems L, Muir KW, Panne D, Rowland BD. Structural basis of centromeric cohesion protection. Nat Struct Mol Biol. DOI: 10.1038/s41594-023-00968-y.
Groleau RR, Chapman RSL, Lowe JP, Lyall CL, Kociok-Köhn G, James TD, Bull SD. BINOL as a chiral solvating agent for sulfiniminoboronic Acids. Anal Chem. doi: 10.1021/acs.analchem.3c01613.
Hardwick SW, Stavridi AK, Chirgadze DY, De Oliveira TM, Charbonnier JB, Ropars V, Meek K, Blundell TL, Chaplin AK. Cryo-EM structure of a DNA-PK trimer: higher order oligomerisation in NHEJ. Structure. S0969-2126(23)00167-3. : 10.1016/j.str.2023.05.013. DOI: 10.1016/j.str.2023.05.013.
Jackson RA, Britton RG, Jayne S, Lehmann S, Cowley CM, Trethewey CS, Smith VM, Schmid R, Fegan C, Walter HS, Dyer MJ. BTK mutations in patients with chronic lymphocytic leukemia (CLL) receiving tirabrutinib. Blood Adv. DOI: 10.1182/bloodadvances.2022009366.
John T, Pires E, Hester SS, Salah E, Hopkinson RJ, Schofield CJ Formaldehyde reacts with N-terminal proline residues to give bicyclic aminals. Commun Chem 6, 12 . DOI: 10.1038/s42004-022-00801-5.
Johnson A, Olelewe C, Kim JH, Northcote-Smith J, Mertens RT, Passeri G, Singh K, Awuah SG, Suntharalingam K, The anti-breast cancer stem cell properties of gold(i)-non-steroidal anti-inflammatory drug complexes Chemical Science, 2023, 14, 557-565. DOI: 10.1039/d2sc04707A.
Kang-Pettinger T, Walker K, Brown R, Cowan R, Wright H, Baravalle R, Waters LC, Muskett FW, Bowler MW, Sawmynaden K, Coombs PJ, Carr MD, Hall G. Identification, binding, and structural characterization of single domain anti-PD-L1 antibodies inhibitory of immune regulatory proteins PD-1 and CD80. J Biol Chem. 299(1):102769. DOI: 10.1016/j.jbc.2022.102769.
Kefala Stavridi A, Gontier A, Morin V, Frit P, Ropars V, Barboule N, Racca C, Jonchhe S, Morten MJ, Andreani J, Rak A, Legrand P, Bourand-Plantefol A, Hardwick SW, Chirgadze DY, Davey P, De Oliveira TM, Rothenberg E, Britton S, Calsou P, Blundell TL, Varela PF, Chaplin AK, Charbonnier JB. Structural and functional basis of inositol hexaphosphate stimulation of NHEJ through stabilization of Ku-XLF interaction. Nucleic Acids Res. 2023 Oct 23:gkad863. DOI: 10.1093/nar/gkad863. PMID: 37870477.
Kuzdere T, Flury V, Schalch T, Iesmantavicius V, Hess D, Bühler M. Differential phosphorylation of Clr4SUV39H by Cdk1 accompanies a histone H3 methylation switch that is essential for gametogenesis. EMBO Rep. 24(1):e55928. DOI: 10.15252/embr.202255928.
Martini MA, Bikbaev K, Pang Y, Lorent C, Wiemann C, Breuer N, Zebger I, DeBeer S, Span I, Bjornsson R, Birrell JA, Rodríguez-Maciá P. Binding of exogenous cyanide reveals new active-site states in [FeFe] hydrogenases; Chem. Sci., 14, 2826-2838. DOI: 10.1039/D2SC06098A.
Northcote-Smith J, Suntharalingam K. Targeting chemotherapy-resistant tumour sub-populations using inorganic chemistry: Anti-cancer stem cell metal complexes. Curr Opin Chem Biol. 72:102237. doi: 10.1016/j.cbpa.2022.102237. Epub 2022 Dec 19. PMID: 36542889.
Osei P, Northcote-Smith J, Fang J, Singh K, Ortu F, Suntharalingam K. The Bulk Breast Cancer Cell and Breast Cancer Stem Cell Activity of Bi-nuclear Copper(II)-Phenanthroline Complexes. Chemistry. DOI: 10.1002/chem.202301188.
Passeri, G., Vincent, R. A., Xiao, Z., Northcote-Smith, J., Suntharalingam, K. Encapsulation and Delivery of an Osteosarcoma Stem Cell Active Gallium(III)-Diflunisal Complex Using Polymeric Micelles. ChemMedChem 2023, e202200599. DOI: 10.1002/cmdc.202200599.
Passeri G, Northcote-Smith J, Suntharalingam K. Payload Release Profile and Anti-Cancer Stem Cell Properties of Compositionally Different Polymeric Nanoparticles Containing a Copper(II) Complex. Molecules. 28(6):2506. doi: 10.3390/molecules28062506. PMID: 36985478; PMCID: PMC10051418.
Patel U, Smalley JP, Hodgkinson JT. PROTAC chemical probes for histone deacetylase enzymes. RSC Chem Biol. 2023 Jul 27;4(9):623-634. doi: 10.1039/d3cb00105a.
Ragan TJ, Vincent HA. PCR-Based Assembly of Gene Sequences by Thermodynamically Balanced Inside-Out (TBIO) Gene Synthesis. Methods Mol Biol. 2633:65-79. DOI: 10.1007/978-1-0716-3004-4_6.
Sawmynaden K, Wong N, Davies S, Cowan R, Brown R, Tang D, Henry M, Tickle D, Matthews D, Carr M, Bakrania P, Hoi Ting H, Hall G. Co-crystallisation and humanisation of an anti-HER2 single-domain antibody as a theranostic tool. PLoS One. 18(7):e0288259. DOI: 10.1371/journal.pone.0288259.
Saward BG, Leissing TM, Clifton IJ, Tumber A, Timperley CM, Hopkinson RJ, Schofield CJ. Biochemical and Structural Insights into FIH-Catalysed Hydroxylation of Transient Receptor Potential Ankyrin Repeat Domains ChemBioChem 2023, e202200576. DOI: 10.1002/cbic.202200576.
Seif-El-Dahan M, Kefala-Stavridi A, Frit F, Hardwick SW, Chirgadze DY, Maia De Oliviera T, Britton S, Barboule N, Bossaert M, Prasad Pandurangan A, Meek K, Blundell TL, Ropars V, Calsou P, Charbonnier J-B, Chaplin AK. PAXX binding to the NHEJ machinery explains functional redundancy with XLFPAXX and XLF functional redundancy Science Advances 9, Issue 22. DOI: 10.1126/sciadv.adg2834.
Shaw DJ, Waters LC, Strong SL, Schulze MED, Greetham GM, Towrie M, Parker AW, Prosser CE, Henry AJ, Lawson ADG, Carr MD, Taylor RJ, Hunt NT, Muskett FW. Modulation of IL-17 backbone dynamics reduces receptor affinity and reveals a new inhibitory mechanism. Chem Sci. 2023 Jun 16;14(27):7524-7536. doi: 10.1039/d3sc00728f. PMID: 37449080; PMCID: PMC10337760. DOI: 10.1039/d3sc00728f.
Singh K, Northcote-Smith J, Kuldip Singh K, Suntharalingam K. Cancer stem cell activity of copper(II)-terpyridine complexes with aryl sulfonamide groups Dalton Transactions. DOI 10.1039/D3DT01294H.
Solomon JJ, Danoff SK, Woodhead FA, Hurwitz S, Maurer R, Glaspole I, Dellaripa PF, Gooptu B, Vassallo R, Cox PG, Flaherty KR, Adamali HI, Gibbons MA, Troy L, Forrest IA, Lasky JA, Spencer LG, Golden J, Scholand MB, Chaudhuri N, Perrella MA, Lynch DA, Chambers DC, Kolb M, Spino C, Raghu G, Goldberg HJ, Rosas IO; TRAIL1 Network Investigators. Safety, tolerability, and efficacy of pirfenidone in patients with rheumatoid arthritis-associated interstitial lung disease: a randomised, double-blind, placebo-controlled, phase 2 study. Lancet Respir Med. 2023; DOI: 10.1016/S2213-2600(22)00260-0.
Stewart I, Jacob J, George PM, Molyneaux PL, Porter JC, Allen RJ, Aslani S, Baillie JK, Barratt SL, Beirne P, Bianchi SM, Blaikley JF, Chalmers JD, Chambers RC, Chadhuri N, Coleman C, Collier G, Denneny EK, Docherty A, Elneima O, Evans RA, Fabbri L, Gibbons MA, Gleeson FV, Gooptu B, Greening NJ, Guio BG, Hall IP, Hanley NA, Harris V, Harrison EM, Heightman M, Hillman TE, Horsley A, Houchen-Wolloff L, Jarrold I, Johnson SR, Jones MG, Khan F, Lawson R, Leavy O, Lone N, Marks M, McAuley H, Mehta P, Parekh D, Hanley KP, Platé M, Pearl J, Poinasamy K, Quint JK, Raman B, Richardson M, Rivera-Ortega P, Saunders L, Saunders R, Semple MG, Sereno M, Shikotra A, Simpson AJ, Singapuri A, Smith DJF, Spears M, Spencer LG, Stanel S, Thickett DR, Thompson AAR, Thorpe M, Walsh SLF, Walker S, Weatherley ND, Weeks ME, Wild JM, Wootton DG, Brightling CE, Ho LP, Wain LV, Jenkins GR. Residual Lung Abnormalities after COVID-19 Hospitalization: Interim Analysis of the UKILD Post-COVID-19 Study. Am J Respir Crit Care Med. 207:693-703. PMID: 36457159 DOI: 10.1164/rccm.202203-0564OC.
Tariq M, Ikeya T, Togashi N, Fairall L, Kamei S, Mayooramurugan S, Abbott LR, Hasan A, Bueno-Alejo C, Sukegawa S, Romartinez-Alonso B, Muro Campillo MA, Hudson AJ, Ito Y, Schwabe JWR, Cyril Dominguez C, Tanaka K. Complex formation of oncogenic K-Ras4BG12V and Rgl2, a RalA/B activator Life Science Alliance 7 (1) e202302080; DOI: 10.26508/lsa.202302080
Tibbetts JD, Hutchby M, Cunningham WB, Chapman RSL, Kociok-Köhn G, Davidson MG, Bull SD. Sustainable Syntheses of Paracetamol and Ibuprofen from Biorenewable β-pinene. ChemSusChem.DOI : 10.1002/cssc.202300670.
Valand N, Gazioglu O, Yesilkaya H, Shivkumar M, Horley N, Arroo R, Wallis R, Kishore U, Venkatraman Girija U. Interactions of Candida tropicalis pH-related antigen 1 with complement proteins C3, C3b, factor-H, C4BP and complement evasion. Immunobiology. 228(1):152303. DOI: 10.1016/j.imbio.2022.152303.
Verhoef CJA, Kay DF, van Dijck L, Doveston RG, Brunsveld L, Leney AC, Cossar PJ Tracking the mechanism of covalent molecular glue stabilization using native mass spectrometry Chem. Sci., DOI: 10.1039/D3SC01732J.
Walker K, Baravalle R, Holyfield R, Kalms J, Wright H, Seewooruthun C, Muskett FW, Scott-Tucker A, Merritt A, Henry A, Lawson ADG, Hall G, Prosser C, Carr MD. Identification and characterisation of anti-IL-13 inhibitory single domain antibodies provides new insights into receptor selectivity and attractive opportunities for drug discovery Front Immunol. 2023 Jul 6;14:1216967. eCollection 2023. DOI: 10.3389/fimmu.2023.1216967.
Walker V, Vuister GW. Biochemistry and pathophysiology of the Transient Potential Receptor Vanilloid 6 (TRPV6) calcium channel. Adv Clin Chem.113:43-100. DOI: 10.1016/bs.acc.2022.11.002.
Wang S, Fairall L, Pham TK, Ragan TJ, Vashi D, Collins MO, Dominguez C, Schwabe JWR. A potential histone-chaperone activity for the MIER1 histone deacetylase complex. Nucleic Acids Res. DOI: 10.1093/nar/gkad294.
Wilkinson AJ, Ooi N, Finlayson J, Lee VE, Lyth D, Maskew KS, Newman R, Orr D, Ansell K, Birchall K, Canning P, Coombs P, Fusani L, McIver E, Pisco J, Ireland PM, Jenkins C, Norville IH, Southern SJ, Cowan R, Hall G, Kettleborough C, Savage VJ, Cooper IR. Evaluating the druggability of TrmD, a potential antibacterial target, through design and microbiological profiling of a series of potent TrmD inhibitors. Bioorg Med Chem Lett. DOI: 10.1016/j.bmcl.2023.129331.
2022
Ameerul A, Almasmoum H, Pavanello L, Dominguez C, Winkler GS Structural model of the human BTG2-PABPC1 complex by combining mutagenesis, NMR chemical shift perturbation data and molecular docking. J. Mol. Biol. 434, 167662. DOI: 10.1016/j.jmb.2022.167662.
Abdullah IT, Ulijasz AT, Girija UV, Tam S, Andrew P, Hiller NL, Wallis R, Yesilkaya H. Structure-function analysis for the development of peptide inhibitors for a Gram-positive quorum sensing system. Mol Microbiol. 117(6):1464-1478. DOI: 10.1111/mmi.14921
Archibald LJ, Brown EA, Millard CJ, Watson PJ, Robertson NS, Wang S, Schwabe JWR, Jamieson AG. Hydroxamic Acid-Modified Peptide Library Provides Insights into the Molecular Basis for the Substrate Selectivity of HDAC Corepressor Complexes. ACS Chem Biol. 17(9):2572-2582. DOI:10.1021/acschembio.2c00510.
Baker IM, Smalley JP, Sabat KA, Hodgkinson JT, and Cowley SM Comprehensive Transcriptomic Analysis of Novel Class I HDAC Proteolysis Targeting Chimeras (PROTACs) Biochemistry DOI: 10.1021/acs.biochem.2c00288
Bate N, Savva CG, Moody PCE, Brown EA, Evans SE, Ball JK, Schwabe JWR, Julian E. Sale JE, Brindle NPJ. In vitro evolution predicts emerging SARS-CoV-2 mutations with high affinity for ACE2 and cross-species binding Plos pathogens. DOI: 10.1371/journal.ppat.1010733
Becker J, Lielpetere A, Szczesny J, Junqueira J, Rodríguez-Maciá P, Birrell J, Conzuelo F, Schuhmann W. Bioelectrocatalytic CO2 Reduction by Redox Polymer Wired Carbon Monoxide Dehydrogenase Gas Diffusion Electrodes; ACS Appl. Mater. Interfaces, 14, 46421–46426. DOI: 10.1021/acsami.2c09547.
Bhogadia m, Stone B, Del Villar Guerra R, Muskett FW, Ghosh S, Taladriz-Sender A, Burley GA, Eperon IC, Hudson AJ, Dominguez C Biophysical characterisation of the Bcl-x pre-mRNA and binding specificity of the ellipticine derivative GQC-05: Implication for alternative splicing regulation Frontiers in Molecular Biosciences 9 DOI: 10.3389/fmolb.2022.943105
Bidula S, Nadzirin IB, Cominetti M, Hickey H, Cullum SA, Searcey M, Schmid R, Fountain SJ. Structural Basis of the Negative Allosteric Modulation of 5-BDBD at Human P2X4 Receptors. Mol Pharmacol. 101(1):33-44.
Bilkei-Gorzo O, Heunis T, Marín-Rubio JL, Cianfanelli FR, Raymond BBA, Inns J, Fabrikova D, Peltier J, Oakley F, Schmid R, Härtlova A, Trost M. The E3 ubiquitin ligase RNF115 regulates phagosome maturation and host response to bacterial infection. EMBO J. ;41(23): DOI:10.15252/embj.2021108970
Blair K, Tehseen M, Raducanu VS, Shahid T, Lancey C, Rashid F, Creuhet R, Hamdan SM, De Biasio A. Mechanism of human Lig1 regulation by PCNA in Okazaki fragment sealing. Nat Commun 13, 7833 DOI: 10.1038/s41467-022-35475-z
Brotherton DH, Savva CG, Ragan TJ, Dale N, Cameron AD. Conformational changes and CO2-induced channel gating in connexin26. Structure. DOI: 10.1016/j.str.2022.02.010
Bueno-Alejo, C.J., Santana Vega, M., Chaplin, A., Farrow, C., Axer, A., Burley, G.A., Dominguez, C., Kara, H., Paschalis, V., Tubasum, S., Eperon, I.C., Clark, A.W., and Hudson, A.J. (2022). Surface passivation with a perfluoroalkane brush improves the precision of single molecule measurements. ACS Appl. Mater. Interfaces 14, 49604−49616. DOI:10.1021/acsami.2c16647
Cross JM, Coulson ME, Smalley JP, Pytel WA, Ismail O, Trory JS, Cowley SM, Hodgkinson JT. A ‘click’ chemistry approach to novel entinostat (MS-275) based class I histone deacetylase proteolysis targeting chimeras RSC Medicinal Chemistry DOI: DOI:10.1039/D2MD00199C
Dayl, S, Schmid, R.Fully Flexible Ligand Docking for the P2X7 Receptor Using ROSIE. In: Nicke, A. (eds) The P2X7 Receptor. Methods in Molecular Biology, vol 2510. Humana, New York, NY. DOI:10.1007/978-1-0716-2384-8_4
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2018
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